Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Usf1Q61069 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC11.54□□□□□ -0.56
Usf1Q61069 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC11.54□□□□□ -0.56
Usf1Q61069 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC11.54□□□□□ -0.56
Usf1Q61069 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Usf1Q61069 Gm43823-201ENSMUST00000197391 1808 ntBASIC11.54□□□□□ -0.56
Usf1Q61069 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC11.54□□□□□ -0.56
Usf1Q61069 Gm4993-201ENSMUST00000118719 1174 ntBASIC11.54□□□□□ -0.56
Usf1Q61069 Gm11667-201ENSMUST00000119828 486 ntBASIC11.54□□□□□ -0.56
Usf1Q61069 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC11.54□□□□□ -0.56
Usf1Q61069 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC11.54□□□□□ -0.56
Usf1Q61069 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC11.54□□□□□ -0.56
Usf1Q61069 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC11.54□□□□□ -0.56
Usf1Q61069 AC159205.5-202ENSMUST00000224849 386 ntBASIC11.54□□□□□ -0.56
Usf1Q61069 AC154849.4-201ENSMUST00000224868 365 ntBASIC11.54□□□□□ -0.56
Usf1Q61069 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC11.54□□□□□ -0.56
Usf1Q61069 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Usf1Q61069 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC11.54□□□□□ -0.56
Usf1Q61069 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Ntrk2-209ENSMUST00000225950 2640 ntBASIC11.54□□□□□ -0.56
Usf1Q61069 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Usf1Q61069 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC11.53□□□□□ -0.56
Usf1Q61069 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Usf1Q61069 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Gm12165-201ENSMUST00000117047 342 ntBASIC11.53□□□□□ -0.56
Usf1Q61069 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC11.53□□□□□ -0.56
Usf1Q61069 Gm13045-201ENSMUST00000119019 712 ntBASIC11.53□□□□□ -0.56
Usf1Q61069 Gm13888-201ENSMUST00000119148 422 ntBASIC11.53□□□□□ -0.56
Usf1Q61069 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC11.53□□□□□ -0.56
Usf1Q61069 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC11.53□□□□□ -0.56
Usf1Q61069 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Usf1Q61069 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Gm9230-201ENSMUST00000188228 532 ntBASIC11.53□□□□□ -0.56
Usf1Q61069 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
Usf1Q61069 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC11.53□□□□□ -0.56
Usf1Q61069 AC125209.1-201ENSMUST00000225812 766 ntBASIC11.53□□□□□ -0.56
Usf1Q61069 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Usf1Q61069 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Gm10179-201ENSMUST00000086233 688 ntBASIC11.53□□□□□ -0.56
Usf1Q61069 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Usf1Q61069 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC11.53□□□□□ -0.56
Usf1Q61069 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC11.53□□□□□ -0.56
Usf1Q61069 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 AC159308.2-201ENSMUST00000213592 2325 ntBASIC11.53□□□□□ -0.56
Usf1Q61069 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Usf1Q61069 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms