Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
Upf3bQ3ULL6 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Upf3bQ3ULL6 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
Upf3bQ3ULL6 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
Upf3bQ3ULL6 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Upf3bQ3ULL6 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Upf3bQ3ULL6 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Upf3bQ3ULL6 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Gm8062-201ENSMUST00000139696 444 ntBASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Gm8738-201ENSMUST00000172606 329 ntBASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Gm17823-201ENSMUST00000217830 1006 ntBASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Upf3bQ3ULL6 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Gm22018-201ENSMUST00000104357 131 ntBASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Gm9431-201ENSMUST00000119765 1051 ntBASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Gm13492-201ENSMUST00000119772 665 ntBASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Gm16296-201ENSMUST00000159905 325 ntBASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Gm5781-201ENSMUST00000219792 443 ntBASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Upf3bQ3ULL6 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 AC154462.2-201ENSMUST00000227519 370 ntBASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Upf3bQ3ULL6 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 56.8 ms