Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC15.98■□□□□ 0.15
Msh6P54276 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Msh6P54276 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC15.98■□□□□ 0.15
Msh6P54276 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Msh6P54276 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Retreg1-206ENSMUST00000228306 1430 ntBASIC15.98■□□□□ 0.15
Msh6P54276 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Msh6P54276 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC15.98■□□□□ 0.15
Msh6P54276 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC15.98■□□□□ 0.15
Msh6P54276 Rmrp-201ENSMUST00000157463 271 ntBASIC15.98■□□□□ 0.15
Msh6P54276 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC15.98■□□□□ 0.15
Msh6P54276 Gm5616-201ENSMUST00000165252 384 ntBASIC15.98■□□□□ 0.15
Msh6P54276 Gm8741-201ENSMUST00000174736 384 ntBASIC15.98■□□□□ 0.15
Msh6P54276 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC15.98■□□□□ 0.15
Msh6P54276 Gm44551-201ENSMUST00000208804 171 ntBASIC15.98■□□□□ 0.15
Msh6P54276 AC159205.5-202ENSMUST00000224849 386 ntBASIC15.98■□□□□ 0.15
Msh6P54276 AL732506.1-201ENSMUST00000226420 281 ntBASIC15.98■□□□□ 0.15
Msh6P54276 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC15.98■□□□□ 0.15
Msh6P54276 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Msh6P54276 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC15.97■□□□□ 0.15
Msh6P54276 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Msh6P54276 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
Msh6P54276 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC15.97■□□□□ 0.15
Msh6P54276 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC15.97■□□□□ 0.15
Msh6P54276 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
Msh6P54276 Gm12208-201ENSMUST00000122004 163 ntBASIC15.97■□□□□ 0.15
Msh6P54276 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC15.97■□□□□ 0.15
Msh6P54276 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC15.97■□□□□ 0.15
Msh6P54276 Gm43830-201ENSMUST00000198760 1067 ntBASIC15.97■□□□□ 0.15
Msh6P54276 AY036118-201ENSMUST00000200021 923 ntBASIC15.97■□□□□ 0.15
Msh6P54276 Gm44126-201ENSMUST00000204831 514 ntBASIC15.97■□□□□ 0.15
Msh6P54276 Gm5369-201ENSMUST00000217499 588 ntBASIC15.97■□□□□ 0.15
Msh6P54276 Gm10371-202ENSMUST00000228010 1081 ntBASIC15.97■□□□□ 0.15
Msh6P54276 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
Msh6P54276 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Msh6P54276 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Msh6P54276 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Msh6P54276 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC15.96■□□□□ 0.15
Msh6P54276 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Msh6P54276 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Msh6P54276 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Msh6P54276 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Msh6P54276 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Msh6P54276 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Msh6P54276 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC15.96■□□□□ 0.15
Msh6P54276 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC15.96■□□□□ 0.15
Msh6P54276 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC15.96■□□□□ 0.15
Msh6P54276 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
Msh6P54276 Gm8566-201ENSMUST00000120174 465 ntBASIC15.96■□□□□ 0.15
Msh6P54276 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Msh6P54276 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Msh6P54276 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC15.96■□□□□ 0.15
Msh6P54276 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Msh6P54276 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Msh6P54276 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Msh6P54276 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Msh6P54276 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Msh6P54276 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
Msh6P54276 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Msh6P54276 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Msh6P54276 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Msh6P54276 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Msh6P54276 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Msh6P54276 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms