Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col18a1P39061 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col18a1P39061 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col18a1P39061 Gm6170-201ENSMUST00000187672 1388 ntBASIC16.36■□□□□ 0.21
Col18a1P39061 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col18a1P39061 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col18a1P39061 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col18a1P39061 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC16.36■□□□□ 0.21
Col18a1P39061 Myl3-202ENSMUST00000124267 575 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Col18a1P39061 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC16.36■□□□□ 0.21
Col18a1P39061 Gm12906-201ENSMUST00000154610 441 ntBASIC16.36■□□□□ 0.21
Col18a1P39061 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC16.36■□□□□ 0.21
Col18a1P39061 B230110C06Rik-201ENSMUST00000181388 1274 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col18a1P39061 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC16.36■□□□□ 0.21
Col18a1P39061 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC16.36■□□□□ 0.21
Col18a1P39061 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col18a1P39061 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC16.36■□□□□ 0.21
Col18a1P39061 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC16.36■□□□□ 0.21
Col18a1P39061 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Slc40a1-201ENSMUST00000027137 3370 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Col18a1P39061 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC16.35■□□□□ 0.21
Col18a1P39061 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC16.35■□□□□ 0.21
Col18a1P39061 Gm11560-201ENSMUST00000117567 948 ntBASIC16.35■□□□□ 0.21
Col18a1P39061 Gm11500-201ENSMUST00000118237 601 ntBASIC16.35■□□□□ 0.21
Col18a1P39061 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC16.35■□□□□ 0.21
Col18a1P39061 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Col18a1P39061 Gm18801-201ENSMUST00000186616 536 ntBASIC16.35■□□□□ 0.21
Col18a1P39061 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC16.35■□□□□ 0.21
Col18a1P39061 Gm6831-202ENSMUST00000213025 1673 ntBASIC16.35■□□□□ 0.21
Col18a1P39061 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Col18a1P39061 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Gm5639-201ENSMUST00000122305 2403 ntBASIC16.35■□□□□ 0.21
Col18a1P39061 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col18a1P39061 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.35■□□□□ 0.21
Col18a1P39061 Gm42840-201ENSMUST00000200303 2251 ntBASIC16.34■□□□□ 0.21
Col18a1P39061 AC129931.1-201ENSMUST00000228865 1861 ntBASIC16.34■□□□□ 0.21
Col18a1P39061 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 Gm6210-201ENSMUST00000204734 1942 ntBASIC16.34■□□□□ 0.21
Col18a1P39061 Gm18798-201ENSMUST00000187264 1700 ntBASIC16.34■□□□□ 0.21
Col18a1P39061 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Col18a1P39061 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC16.34■□□□□ 0.21
Col18a1P39061 Gm22846-201ENSMUST00000157706 270 ntBASIC16.34■□□□□ 0.21
Col18a1P39061 Gm8459-201ENSMUST00000162504 760 ntBASIC16.34■□□□□ 0.21
Col18a1P39061 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC16.34■□□□□ 0.21
Col18a1P39061 Gm45085-201ENSMUST00000209100 441 ntBASIC16.34■□□□□ 0.21
Col18a1P39061 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC16.34■□□□□ 0.21
Col18a1P39061 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Col18a1P39061 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC16.34■□□□□ 0.21
Col18a1P39061 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC16.34■□□□□ 0.21
Col18a1P39061 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC16.34■□□□□ 0.21
Col18a1P39061 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col18a1P39061 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC16.33■□□□□ 0.21
Col18a1P39061 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.21
Col18a1P39061 Gm10807-201ENSMUST00000177134 795 ntBASIC16.33■□□□□ 0.21
Col18a1P39061 AI839979-201ENSMUST00000200738 654 ntTSL 2 BASIC16.33■□□□□ 0.21
Col18a1P39061 Gm30978-201ENSMUST00000211581 1066 ntTSL 5 BASIC16.33■□□□□ 0.21
Col18a1P39061 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col18a1P39061 Gm11405-201ENSMUST00000118689 1556 ntBASIC16.33■□□□□ 0.21
Col18a1P39061 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col18a1P39061 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col18a1P39061 Gm36970-201ENSMUST00000193688 1859 ntBASIC16.33■□□□□ 0.21
Col18a1P39061 Gm37795-201ENSMUST00000194216 2459 ntBASIC16.33■□□□□ 0.21
Col18a1P39061 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col18a1P39061 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col18a1P39061 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Col18a1P39061 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col18a1P39061 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col18a1P39061 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Col18a1P39061 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col18a1P39061 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col18a1P39061 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms