Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Dchs1-201ENSMUST00000078482 10754 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Kmt2a-202ENSMUST00000114689 16470 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Plxnb3-201ENSMUST00000002079 6030 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Baz2a-203ENSMUST00000217851 8385 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Gm42943-201ENSMUST00000199676 3242 ntBASIC10.48□□□□□ -0.73
Hmgb3O54879 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Gm13517-201ENSMUST00000120782 1495 ntBASIC10.48□□□□□ -0.73
Hmgb3O54879 AC159195.1-201ENSMUST00000225867 2086 ntBASIC10.48□□□□□ -0.73
Hmgb3O54879 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Thsd7a-206ENSMUST00000172356 10998 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Ap2b1-201ENSMUST00000018875 5625 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Olfr943-204ENSMUST00000213830 8305 ntAPPRIS ALT2 TSL 3 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Olfr943-205ENSMUST00000215770 8308 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Gm6415-201ENSMUST00000118488 348 ntBASIC10.47□□□□□ -0.73
Hmgb3O54879 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Gm25911-201ENSMUST00000157621 56 ntBASIC10.47□□□□□ -0.73
Hmgb3O54879 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Gm28630-201ENSMUST00000187806 498 ntBASIC10.47□□□□□ -0.73
Hmgb3O54879 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Gm17330-201ENSMUST00000221047 165 ntBASIC10.47□□□□□ -0.73
Hmgb3O54879 AC133598.3-202ENSMUST00000224219 531 ntBASIC10.47□□□□□ -0.73
Hmgb3O54879 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC10.47□□□□□ -0.73
Hmgb3O54879 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hmgb3O54879 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Dip2a-205ENSMUST00000160048 6551 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.73
Hmgb3O54879 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC10.46□□□□□ -0.73
Hmgb3O54879 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC10.46□□□□□ -0.73
Hmgb3O54879 Gm43677-201ENSMUST00000198098 2378 ntBASIC10.46□□□□□ -0.73
Hmgb3O54879 Bloc1s5-201ENSMUST00000035899 5634 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Hal-202ENSMUST00000129421 5319 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.73
Hmgb3O54879 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC10.46□□□□□ -0.73
Hmgb3O54879 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC10.46□□□□□ -0.73
Hmgb3O54879 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
Hmgb3O54879 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC10.46□□□□□ -0.73
Hmgb3O54879 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC10.46□□□□□ -0.73
Hmgb3O54879 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC10.46□□□□□ -0.73
Hmgb3O54879 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC10.46□□□□□ -0.73
Hmgb3O54879 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 129.2 ms