Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
Scn11aQ9R053 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Scn11aQ9R053 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Scn11aQ9R053 Gm12821-201ENSMUST00000120022 600 ntBASIC25.51■■□□□ 1.67
Scn11aQ9R053 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC25.51■■□□□ 1.67
Scn11aQ9R053 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Scn11aQ9R053 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC25.51■■□□□ 1.67
Scn11aQ9R053 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
Scn11aQ9R053 AC140930.3-201ENSMUST00000222935 274 ntBASIC25.51■■□□□ 1.67
Scn11aQ9R053 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Scn11aQ9R053 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
Scn11aQ9R053 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Scn11aQ9R053 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Scn11aQ9R053 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Scn11aQ9R053 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC25.51■■□□□ 1.67
Scn11aQ9R053 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Scn11aQ9R053 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Scn11aQ9R053 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
Scn11aQ9R053 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
Scn11aQ9R053 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Scn11aQ9R053 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Scn11aQ9R053 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC25.5■■□□□ 1.67
Scn11aQ9R053 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
Scn11aQ9R053 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Scn11aQ9R053 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Scn11aQ9R053 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Scn11aQ9R053 Golgb1-201ENSMUST00000023534 498 ntBASIC25.49■■□□□ 1.67
Scn11aQ9R053 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC25.48■■□□□ 1.67
Scn11aQ9R053 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Scn11aQ9R053 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC25.48■■□□□ 1.67
Scn11aQ9R053 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC25.48■■□□□ 1.67
Scn11aQ9R053 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Scn11aQ9R053 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC25.47■■□□□ 1.67
Scn11aQ9R053 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Scn11aQ9R053 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC25.47■■□□□ 1.67
Scn11aQ9R053 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Scn11aQ9R053 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
Scn11aQ9R053 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
Scn11aQ9R053 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
Scn11aQ9R053 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Scn11aQ9R053 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Scn11aQ9R053 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Scn11aQ9R053 AC153962.1-201ENSMUST00000218530 1948 ntBASIC25.46■■□□□ 1.67
Scn11aQ9R053 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Scn11aQ9R053 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Scn11aQ9R053 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC25.46■■□□□ 1.67
Scn11aQ9R053 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.67
Scn11aQ9R053 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Scn11aQ9R053 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC25.45■■□□□ 1.66
Scn11aQ9R053 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC25.45■■□□□ 1.66
Scn11aQ9R053 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
Scn11aQ9R053 Gm8495-201ENSMUST00000188740 694 ntBASIC25.44■■□□□ 1.66
Scn11aQ9R053 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Scn11aQ9R053 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
Scn11aQ9R053 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Scn11aQ9R053 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.66
Scn11aQ9R053 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC25.44■■□□□ 1.66
Scn11aQ9R053 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Scn11aQ9R053 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Scn11aQ9R053 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Scn11aQ9R053 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Scn11aQ9R053 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC25.43■■□□□ 1.66
Scn11aQ9R053 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC25.43■■□□□ 1.66
Scn11aQ9R053 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC25.43■■□□□ 1.66
Scn11aQ9R053 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC25.43■■□□□ 1.66
Scn11aQ9R053 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC25.43■■□□□ 1.66
Scn11aQ9R053 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Scn11aQ9R053 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC25.43■■□□□ 1.66
Scn11aQ9R053 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
Scn11aQ9R053 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
Scn11aQ9R053 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC25.42■■□□□ 1.66
Scn11aQ9R053 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Scn11aQ9R053 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Scn11aQ9R053 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Scn11aQ9R053 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Scn11aQ9R053 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Scn11aQ9R053 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC25.41■■□□□ 1.66
Scn11aQ9R053 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Scn11aQ9R053 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Scn11aQ9R053 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Scn11aQ9R053 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Scn11aQ9R053 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC25.4■■□□□ 1.66
Scn11aQ9R053 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC25.4■■□□□ 1.66
Scn11aQ9R053 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
Scn11aQ9R053 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC25.39■■□□□ 1.66
Scn11aQ9R053 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC25.39■■□□□ 1.66
Scn11aQ9R053 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC25.39■■□□□ 1.66
Scn11aQ9R053 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Scn11aQ9R053 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
Scn11aQ9R053 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC25.39■■□□□ 1.65
Scn11aQ9R053 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Scn11aQ9R053 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
Scn11aQ9R053 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Scn11aQ9R053 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC25.38■■□□□ 1.65
Scn11aQ9R053 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
Scn11aQ9R053 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
Scn11aQ9R053 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
Scn11aQ9R053 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
Scn11aQ9R053 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Scn11aQ9R053 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms