Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shroom3Q9QXN0 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Shroom3Q9QXN0 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC21.23■□□□□ 0.99
Shroom3Q9QXN0 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shroom3Q9QXN0 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Shroom3Q9QXN0 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shroom3Q9QXN0 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
Shroom3Q9QXN0 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC21.22■□□□□ 0.99
Shroom3Q9QXN0 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shroom3Q9QXN0 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Shroom3Q9QXN0 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shroom3Q9QXN0 Gm37415-201ENSMUST00000192265 2054 ntBASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Gm8093-201ENSMUST00000128935 1892 ntBASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Gm5131-201ENSMUST00000212776 1238 ntBASIC21.21■□□□□ 0.99
Shroom3Q9QXN0 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Shroom3Q9QXN0 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Shroom3Q9QXN0 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Shroom3Q9QXN0 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shroom3Q9QXN0 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Shroom3Q9QXN0 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.19■□□□□ 0.98
Shroom3Q9QXN0 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shroom3Q9QXN0 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.19■□□□□ 0.98
Shroom3Q9QXN0 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shroom3Q9QXN0 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shroom3Q9QXN0 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Shroom3Q9QXN0 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.18■□□□□ 0.98
Shroom3Q9QXN0 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shroom3Q9QXN0 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Shroom3Q9QXN0 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC21.17■□□□□ 0.98
Shroom3Q9QXN0 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC21.17■□□□□ 0.98
Shroom3Q9QXN0 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Shroom3Q9QXN0 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC21.17■□□□□ 0.98
Shroom3Q9QXN0 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Shroom3Q9QXN0 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Shroom3Q9QXN0 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shroom3Q9QXN0 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Shroom3Q9QXN0 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
Shroom3Q9QXN0 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shroom3Q9QXN0 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Shroom3Q9QXN0 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC21.16■□□□□ 0.98
Shroom3Q9QXN0 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC21.16■□□□□ 0.98
Shroom3Q9QXN0 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Shroom3Q9QXN0 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shroom3Q9QXN0 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC21.16■□□□□ 0.98
Shroom3Q9QXN0 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.15■□□□□ 0.98
Shroom3Q9QXN0 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Shroom3Q9QXN0 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC21.15■□□□□ 0.98
Shroom3Q9QXN0 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shroom3Q9QXN0 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC21.15■□□□□ 0.98
Shroom3Q9QXN0 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Shroom3Q9QXN0 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Shroom3Q9QXN0 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Shroom3Q9QXN0 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Shroom3Q9QXN0 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC21.14■□□□□ 0.98
Shroom3Q9QXN0 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shroom3Q9QXN0 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Shroom3Q9QXN0 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Shroom3Q9QXN0 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shroom3Q9QXN0 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shroom3Q9QXN0 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.13■□□□□ 0.97
Shroom3Q9QXN0 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Shroom3Q9QXN0 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.13■□□□□ 0.97
Shroom3Q9QXN0 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Shroom3Q9QXN0 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Shroom3Q9QXN0 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Shroom3Q9QXN0 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.12■□□□□ 0.97
Shroom3Q9QXN0 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Shroom3Q9QXN0 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shroom3Q9QXN0 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shroom3Q9QXN0 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shroom3Q9QXN0 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shroom3Q9QXN0 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Shroom3Q9QXN0 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Shroom3Q9QXN0 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Shroom3Q9QXN0 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Shroom3Q9QXN0 Etf1-202ENSMUST00000180351 108 ntBASIC21.11■□□□□ 0.97
Shroom3Q9QXN0 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Shroom3Q9QXN0 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Shroom3Q9QXN0 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shroom3Q9QXN0 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shroom3Q9QXN0 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shroom3Q9QXN0 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shroom3Q9QXN0 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shroom3Q9QXN0 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shroom3Q9QXN0 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shroom3Q9QXN0 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC21.1■□□□□ 0.97
Shroom3Q9QXN0 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Shroom3Q9QXN0 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Shroom3Q9QXN0 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Shroom3Q9QXN0 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 151.5 ms