Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
Ddb1Q3U1J4 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Ddb1Q3U1J4 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
Ddb1Q3U1J4 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
Ddb1Q3U1J4 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC27.3■■□□□ 1.96
Ddb1Q3U1J4 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Ddb1Q3U1J4 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Ddb1Q3U1J4 Gm7291-201ENSMUST00000199147 382 ntBASIC27.29■■□□□ 1.96
Ddb1Q3U1J4 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
Ddb1Q3U1J4 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC27.29■■□□□ 1.96
Ddb1Q3U1J4 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Ddb1Q3U1J4 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Ddb1Q3U1J4 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
Ddb1Q3U1J4 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC27.28■■□□□ 1.96
Ddb1Q3U1J4 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Ddb1Q3U1J4 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Ddb1Q3U1J4 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Ddb1Q3U1J4 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC27.28■■□□□ 1.96
Ddb1Q3U1J4 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Ddb1Q3U1J4 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Ddb1Q3U1J4 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC27.27■■□□□ 1.96
Ddb1Q3U1J4 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Ddb1Q3U1J4 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC27.26■■□□□ 1.95
Ddb1Q3U1J4 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
Ddb1Q3U1J4 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Ddb1Q3U1J4 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Ddb1Q3U1J4 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Ddb1Q3U1J4 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Ddb1Q3U1J4 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC27.26■■□□□ 1.95
Ddb1Q3U1J4 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Ddb1Q3U1J4 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Ddb1Q3U1J4 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC27.25■■□□□ 1.95
Ddb1Q3U1J4 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC27.25■■□□□ 1.95
Ddb1Q3U1J4 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
Ddb1Q3U1J4 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC27.25■■□□□ 1.95
Ddb1Q3U1J4 Gm5576-201ENSMUST00000075809 1236 ntBASIC27.25■■□□□ 1.95
Ddb1Q3U1J4 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Ddb1Q3U1J4 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Ddb1Q3U1J4 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Ddb1Q3U1J4 Gm43173-201ENSMUST00000202246 593 ntBASIC27.24■■□□□ 1.95
Ddb1Q3U1J4 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC27.24■■□□□ 1.95
Ddb1Q3U1J4 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
Ddb1Q3U1J4 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Ddb1Q3U1J4 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
Ddb1Q3U1J4 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
Ddb1Q3U1J4 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
Ddb1Q3U1J4 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
Ddb1Q3U1J4 Gm6934-201ENSMUST00000194780 1905 ntBASIC27.22■■□□□ 1.95
Ddb1Q3U1J4 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Ddb1Q3U1J4 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
Ddb1Q3U1J4 AC158990.1-201ENSMUST00000221450 2016 ntBASIC27.22■■□□□ 1.95
Ddb1Q3U1J4 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
Ddb1Q3U1J4 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Ddb1Q3U1J4 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
Ddb1Q3U1J4 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC27.21■■□□□ 1.95
Ddb1Q3U1J4 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
Ddb1Q3U1J4 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC27.2■■□□□ 1.95
Ddb1Q3U1J4 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
Ddb1Q3U1J4 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
Ddb1Q3U1J4 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Ddb1Q3U1J4 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC27.2■■□□□ 1.94
Ddb1Q3U1J4 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Ddb1Q3U1J4 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC27.19■■□□□ 1.94
Ddb1Q3U1J4 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Ddb1Q3U1J4 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Ddb1Q3U1J4 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Ddb1Q3U1J4 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Ddb1Q3U1J4 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Ddb1Q3U1J4 Gm8770-201ENSMUST00000121113 1109 ntBASIC27.18■■□□□ 1.94
Ddb1Q3U1J4 Gm10657-201ENSMUST00000193528 1031 ntBASIC27.18■■□□□ 1.94
Ddb1Q3U1J4 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Ddb1Q3U1J4 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
Ddb1Q3U1J4 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC27.18■■□□□ 1.94
Ddb1Q3U1J4 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
Ddb1Q3U1J4 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
Ddb1Q3U1J4 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Ddb1Q3U1J4 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Ddb1Q3U1J4 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
Ddb1Q3U1J4 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Ddb1Q3U1J4 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Ddb1Q3U1J4 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
Ddb1Q3U1J4 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Ddb1Q3U1J4 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC27.16■■□□□ 1.94
Ddb1Q3U1J4 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
Ddb1Q3U1J4 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Ddb1Q3U1J4 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC27.16■■□□□ 1.94
Ddb1Q3U1J4 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Ddb1Q3U1J4 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Ddb1Q3U1J4 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
Ddb1Q3U1J4 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
Ddb1Q3U1J4 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Ddb1Q3U1J4 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Ddb1Q3U1J4 Gm12251-201ENSMUST00000117893 792 ntBASIC27.14■■□□□ 1.94
Ddb1Q3U1J4 Gm26571-201ENSMUST00000181399 666 ntBASIC27.14■■□□□ 1.94
Ddb1Q3U1J4 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Ddb1Q3U1J4 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Ddb1Q3U1J4 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Ddb1Q3U1J4 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
Ddb1Q3U1J4 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC27.14■■□□□ 1.93
Ddb1Q3U1J4 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.93
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms