Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Gm6203-201ENSMUST00000209575 1342 ntBASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Gm18263-201ENSMUST00000220846 1928 ntBASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Gm15198-201ENSMUST00000117283 177 ntBASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Vps28Q9D1C8 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps28Q9D1C8 Gm6992-201ENSMUST00000217973 1607 ntBASIC13.02□□□□□ -0.32
Vps28Q9D1C8 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Vps28Q9D1C8 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Vps28Q9D1C8 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC13.02□□□□□ -0.32
Vps28Q9D1C8 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps28Q9D1C8 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC13.02□□□□□ -0.32
Vps28Q9D1C8 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps28Q9D1C8 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Vps28Q9D1C8 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gm44094-201ENSMUST00000204703 2030 ntBASIC13.02□□□□□ -0.33
Vps28Q9D1C8 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gm27501-201ENSMUST00000183599 107 ntBASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gm29396-201ENSMUST00000185659 716 ntBASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gm18916-201ENSMUST00000198264 1246 ntBASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gm10608-202ENSMUST00000213924 676 ntBASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Mir339-201ENSMUST00000083659 96 ntBASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Olfr582-201ENSMUST00000098212 960 ntBASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gm44851-201ENSMUST00000205735 2309 ntBASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Vps28Q9D1C8 AC151895.1-201ENSMUST00000219025 1742 ntBASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Gm7049-201ENSMUST00000223520 1712 ntBASIC13.02□□□□□ -0.33
Vps28Q9D1C8 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 64.4 ms