Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Gm5620-201ENSMUST00000077991 1348 ntBASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Gm26035-201ENSMUST00000083065 308 ntBASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Gm44942-201ENSMUST00000096093 2072 ntBASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Gm8706-201ENSMUST00000197372 1491 ntBASIC13.36□□□□□ -0.27
Ddx56Q9D0R4 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Gm17435-202ENSMUST00000212699 1998 ntBASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Gm12384-201ENSMUST00000119228 919 ntBASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Gm2639-201ENSMUST00000156881 1297 ntBASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Gm38092-201ENSMUST00000195600 653 ntBASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Gm24526-201ENSMUST00000082921 158 ntBASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ddx56Q9D0R4 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Gm43463-201ENSMUST00000195967 1803 ntBASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms