Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC12.39□□□□□ -0.43
Msh4Q99MT2 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 AC093022.5-201ENSMUST00000226841 1079 ntBASIC12.39□□□□□ -0.43
Msh4Q99MT2 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.39□□□□□ -0.43
Msh4Q99MT2 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.39□□□□□ -0.43
Msh4Q99MT2 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Gm8805-201ENSMUST00000117848 313 ntBASIC12.38□□□□□ -0.43
Msh4Q99MT2 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Gm5370-201ENSMUST00000187187 574 ntBASIC12.38□□□□□ -0.43
Msh4Q99MT2 Gm43630-201ENSMUST00000201550 776 ntBASIC12.38□□□□□ -0.43
Msh4Q99MT2 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Gm9899-201ENSMUST00000065519 555 ntBASIC12.38□□□□□ -0.43
Msh4Q99MT2 Gm10268-201ENSMUST00000085340 555 ntBASIC12.38□□□□□ -0.43
Msh4Q99MT2 Gm43463-201ENSMUST00000195967 1803 ntBASIC12.38□□□□□ -0.43
Msh4Q99MT2 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Gm38049-201ENSMUST00000195698 1372 ntBASIC12.38□□□□□ -0.43
Msh4Q99MT2 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Gm14608-201ENSMUST00000120030 1553 ntBASIC12.38□□□□□ -0.43
Msh4Q99MT2 Gm3052-202ENSMUST00000188254 2224 ntBASIC12.38□□□□□ -0.43
Msh4Q99MT2 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC12.38□□□□□ -0.43
Msh4Q99MT2 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Msh4Q99MT2 Zkscan3-207ENSMUST00000223831 2101 ntBASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms