Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC13.37□□□□□ -0.27
Clp1Q99LI9 Gm6506-201ENSMUST00000119775 1136 ntBASIC13.37□□□□□ -0.27
Clp1Q99LI9 Gm11941-201ENSMUST00000119904 610 ntBASIC13.37□□□□□ -0.27
Clp1Q99LI9 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC13.37□□□□□ -0.27
Clp1Q99LI9 AC154252.2-201ENSMUST00000223593 767 ntBASIC13.37□□□□□ -0.27
Clp1Q99LI9 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Clp1Q99LI9 CT025610.1-201ENSMUST00000224552 1786 ntBASIC13.37□□□□□ -0.27
Clp1Q99LI9 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Clp1Q99LI9 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm6580-201ENSMUST00000117504 1357 ntBASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm43339-201ENSMUST00000200032 1606 ntBASIC13.36□□□□□ -0.27
Clp1Q99LI9 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm12165-201ENSMUST00000117047 342 ntBASIC13.36□□□□□ -0.27
Clp1Q99LI9 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm19459-201ENSMUST00000176240 835 ntBASIC13.36□□□□□ -0.27
Clp1Q99LI9 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm18038-201ENSMUST00000197900 485 ntBASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm9996-201ENSMUST00000070359 913 ntBASIC13.36□□□□□ -0.27
Clp1Q99LI9 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm10179-201ENSMUST00000086233 688 ntBASIC13.36□□□□□ -0.27
Clp1Q99LI9 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Gm18626-201ENSMUST00000221512 1409 ntBASIC13.36□□□□□ -0.27
Clp1Q99LI9 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Clp1Q99LI9 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.35□□□□□ -0.27
Clp1Q99LI9 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Gm14058-201ENSMUST00000116082 735 ntBASIC13.35□□□□□ -0.27
Clp1Q99LI9 Gm8566-201ENSMUST00000120174 465 ntBASIC13.35□□□□□ -0.27
Clp1Q99LI9 Gm15432-201ENSMUST00000121106 195 ntBASIC13.35□□□□□ -0.27
Clp1Q99LI9 Rmrp-201ENSMUST00000157463 271 ntBASIC13.35□□□□□ -0.27
Clp1Q99LI9 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 AC122876.1-201ENSMUST00000217619 825 ntBASIC13.35□□□□□ -0.27
Clp1Q99LI9 AC154849.4-201ENSMUST00000224868 365 ntBASIC13.35□□□□□ -0.27
Clp1Q99LI9 AL732506.1-201ENSMUST00000226420 281 ntBASIC13.35□□□□□ -0.27
Clp1Q99LI9 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Clp1Q99LI9 Gm44999-201ENSMUST00000207456 1493 ntBASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms