Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Gm7993-201ENSMUST00000200970 1384 ntBASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Gm7114-201ENSMUST00000190159 1789 ntBASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Gm6203-201ENSMUST00000209575 1342 ntBASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Gm11637-201ENSMUST00000120601 592 ntBASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Gm2231-201ENSMUST00000125661 612 ntBASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Mir5132-201ENSMUST00000175166 71 ntBASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Gm38000-201ENSMUST00000192390 1215 ntBASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Ighv1-62-201ENSMUST00000193406 350 ntBASIC14.25□□□□□ -0.13
Ushbp1Q8R370 AC154462.2-201ENSMUST00000227519 370 ntBASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Mir339-201ENSMUST00000083659 96 ntBASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Ushbp1Q8R370 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 AC154262.2-202ENSMUST00000225158 1331 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Gm17435-202ENSMUST00000212699 1998 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Gm16479-201ENSMUST00000121706 932 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Gm5637-201ENSMUST00000153890 1119 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Gm37259-201ENSMUST00000193903 849 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Gm3786-201ENSMUST00000202659 378 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 CT573034.1-201ENSMUST00000222983 313 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Mettl6-204ENSMUST00000227595 1027 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Mir433-201ENSMUST00000093564 124 ntBASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ushbp1Q8R370 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Gm14921-201ENSMUST00000118643 908 ntBASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms