Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Gm43823-201ENSMUST00000197391 1808 ntBASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Gm19184-201ENSMUST00000196798 928 ntBASIC15.32■□□□□ 0.04
Brf1Q8CFK2 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
Brf1Q8CFK2 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Daam2-202ENSMUST00000224595 1926 ntBASIC15.31■□□□□ 0.04
Brf1Q8CFK2 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Gm13492-201ENSMUST00000119772 665 ntBASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Gm5850-201ENSMUST00000192923 1206 ntBASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Gm22058-201ENSMUST00000083393 310 ntBASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Gm3287-205ENSMUST00000228893 1332 ntBASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Gm45266-201ENSMUST00000210111 2173 ntBASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Brf1Q8CFK2 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Gm15703-201ENSMUST00000120250 880 ntBASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Gm11964-201ENSMUST00000120982 444 ntBASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Gm5781-201ENSMUST00000219792 443 ntBASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 AC154462.2-201ENSMUST00000227519 370 ntBASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Brf1Q8CFK2 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Gm27194-201ENSMUST00000175753 2936 ntBASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Brf1Q8CFK2 Gm12329-201ENSMUST00000120829 1007 ntBASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms