Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Gm11803-201ENSMUST00000119966 444 ntBASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Gm22331-201ENSMUST00000158066 136 ntBASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Gm9124-201ENSMUST00000191789 1092 ntBASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Gm9113-201ENSMUST00000192510 1018 ntBASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Gm9131-201ENSMUST00000193557 1089 ntBASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Gm9121-201ENSMUST00000193749 1071 ntBASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Gm10012-201ENSMUST00000078252 192 ntBASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Olfr582-201ENSMUST00000098212 960 ntBASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Sh3rf1Q69ZI1 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Sh3rf1Q69ZI1 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.9□□□□□ -0.35
Sh3rf1Q69ZI1 Gm5422-201ENSMUST00000050717 2721 ntBASIC12.9□□□□□ -0.35
Sh3rf1Q69ZI1 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 AC159896.2-201ENSMUST00000214753 269 ntBASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 AC154319.1-201ENSMUST00000216330 312 ntBASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Gm18473-201ENSMUST00000220543 868 ntBASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 AL589735.1-201ENSMUST00000224353 270 ntBASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Rassf8-202ENSMUST00000058538 1131 ntBASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Gm5161-201ENSMUST00000075243 853 ntBASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sh3rf1Q69ZI1 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Gm11661-201ENSMUST00000121761 1327 ntBASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Gm42840-201ENSMUST00000200303 2251 ntBASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Gm6152-201ENSMUST00000151704 340 ntBASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Gm8810-201ENSMUST00000172895 754 ntBASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Gm5370-201ENSMUST00000187187 574 ntBASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Gm45691-201ENSMUST00000206905 1120 ntBASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Sh3rf1Q69ZI1 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.88□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms