Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
Nr1h4Q60641 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nr1h4Q60641 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nr1h4Q60641 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC12.13□□□□□ -0.47
Nr1h4Q60641 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nr1h4Q60641 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.12□□□□□ -0.47
Nr1h4Q60641 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Gm44069-201ENSMUST00000204898 506 ntBASIC12.12□□□□□ -0.47
Nr1h4Q60641 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Gm6458-201ENSMUST00000211573 635 ntBASIC12.12□□□□□ -0.47
Nr1h4Q60641 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Gm16372-201ENSMUST00000073088 450 ntBASIC12.12□□□□□ -0.47
Nr1h4Q60641 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nr1h4Q60641 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.11□□□□□ -0.47
Nr1h4Q60641 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Gm14350-201ENSMUST00000116642 640 ntBASIC12.11□□□□□ -0.47
Nr1h4Q60641 Ldha-ps-201ENSMUST00000119390 995 ntBASIC12.11□□□□□ -0.47
Nr1h4Q60641 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12.11□□□□□ -0.47
Nr1h4Q60641 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Gm9061-201ENSMUST00000182707 1006 ntBASIC12.11□□□□□ -0.47
Nr1h4Q60641 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC12.11□□□□□ -0.47
Nr1h4Q60641 Mir6956-201ENSMUST00000183598 62 ntBASIC12.11□□□□□ -0.47
Nr1h4Q60641 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Gm7730-201ENSMUST00000212486 454 ntBASIC12.11□□□□□ -0.47
Nr1h4Q60641 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.11□□□□□ -0.47
Nr1h4Q60641 CT009757.3-201ENSMUST00000223367 2320 ntBASIC12.11□□□□□ -0.47
Nr1h4Q60641 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nr1h4Q60641 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms