Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Gm11400-201ENSMUST00000120853 1214 ntBASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Gm44985-201ENSMUST00000206202 1016 ntBASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Gm9063-201ENSMUST00000223299 582 ntBASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Gm6447-201ENSMUST00000118905 835 ntBASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Gm13616-201ENSMUST00000120600 222 ntBASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 AC159114.1-201ENSMUST00000220349 266 ntBASIC11.91□□□□□ -0.5
Trim40Q3UWA4 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Trim40Q3UWA4 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms