Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC13.1□□□□□ -0.31
HttP42859 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
HttP42859 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HttP42859 Gm24809-201ENSMUST00000175318 271 ntBASIC13.1□□□□□ -0.31
HttP42859 Gm43506-201ENSMUST00000200675 753 ntBASIC13.1□□□□□ -0.31
HttP42859 Gm43852-201ENSMUST00000202098 917 ntBASIC13.1□□□□□ -0.31
HttP42859 Gm30978-201ENSMUST00000211581 1066 ntTSL 5 BASIC13.1□□□□□ -0.31
HttP42859 Gm5705-201ENSMUST00000066241 711 ntBASIC13.1□□□□□ -0.31
HttP42859 P2rx7-202ENSMUST00000086247 712 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HttP42859 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
HttP42859 S100a3-201ENSMUST00000001047 712 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
HttP42859 Gm24328-201ENSMUST00000175104 67 ntBASIC13.1□□□□□ -0.31
HttP42859 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
HttP42859 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC13.1□□□□□ -0.31
HttP42859 Nkg7-201ENSMUST00000070518 881 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HttP42859 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HttP42859 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
HttP42859 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HttP42859 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC13.09□□□□□ -0.31
HttP42859 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
HttP42859 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
HttP42859 AC107763.1-201ENSMUST00000226082 1365 ntBASIC13.09□□□□□ -0.31
HttP42859 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.09□□□□□ -0.31
HttP42859 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
HttP42859 Gm28901-201ENSMUST00000188810 474 ntTSL 5 BASIC13.09□□□□□ -0.31
HttP42859 Gm8197-202ENSMUST00000193422 934 ntBASIC13.09□□□□□ -0.31
HttP42859 Gm45085-201ENSMUST00000209100 441 ntBASIC13.09□□□□□ -0.31
HttP42859 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
HttP42859 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
HttP42859 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC13.09□□□□□ -0.31
HttP42859 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Gm43334-201ENSMUST00000197740 1318 ntBASIC13.09□□□□□ -0.31
HttP42859 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HttP42859 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC13.08□□□□□ -0.31
HttP42859 Gm16240-201ENSMUST00000161924 614 ntTSL 2 BASIC13.08□□□□□ -0.31
HttP42859 Gm27956-201ENSMUST00000175604 260 ntBASIC13.08□□□□□ -0.31
HttP42859 AC238811.4-201ENSMUST00000178019 1246 ntBASIC13.08□□□□□ -0.31
HttP42859 AC238940.3-201ENSMUST00000178830 1246 ntBASIC13.08□□□□□ -0.31
HttP42859 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC13.08□□□□□ -0.31
HttP42859 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HttP42859 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC13.08□□□□□ -0.31
HttP42859 Gm5451-201ENSMUST00000080545 579 ntBASIC13.08□□□□□ -0.31
HttP42859 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HttP42859 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC13.08□□□□□ -0.31
HttP42859 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Gm24231-201ENSMUST00000104315 133 ntBASIC13.08□□□□□ -0.32
HttP42859 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC13.08□□□□□ -0.32
HttP42859 Tsc22d3-204ENSMUST00000123898 952 ntTSL 5 BASIC13.08□□□□□ -0.32
HttP42859 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC13.08□□□□□ -0.32
HttP42859 Gm37782-201ENSMUST00000194879 678 ntBASIC13.08□□□□□ -0.32
HttP42859 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HttP42859 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms