Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Sdc1P18828 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Sdc1P18828 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Sdc1P18828 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Sdc1P18828 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Gm5320-201ENSMUST00000207163 1519 ntBASIC10.38□□□□□ -0.75
Sdc1P18828 AC161252.3-201ENSMUST00000225465 1549 ntBASIC10.38□□□□□ -0.75
Sdc1P18828 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Sdc1P18828 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
Sdc1P18828 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC10.38□□□□□ -0.75
Sdc1P18828 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC10.38□□□□□ -0.75
Sdc1P18828 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 AC130671.2-201ENSMUST00000227224 1621 ntBASIC10.38□□□□□ -0.75
Sdc1P18828 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Gm13015-201ENSMUST00000118674 204 ntBASIC10.38□□□□□ -0.75
Sdc1P18828 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
Sdc1P18828 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC10.38□□□□□ -0.75
Sdc1P18828 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Gm43868-201ENSMUST00000205187 2114 ntBASIC10.38□□□□□ -0.75
Sdc1P18828 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Sdc1P18828 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC10.38□□□□□ -0.75
Sdc1P18828 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Sdc1P18828 AC154404.1-201ENSMUST00000223601 2077 ntBASIC10.38□□□□□ -0.75
Sdc1P18828 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
Sdc1P18828 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Sdc1P18828 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Sdc1P18828 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Sdc1P18828 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Sdc1P18828 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC10.37□□□□□ -0.75
Sdc1P18828 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC10.37□□□□□ -0.75
Sdc1P18828 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC10.37□□□□□ -0.75
Sdc1P18828 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC10.37□□□□□ -0.75
Sdc1P18828 Gm11025-201ENSMUST00000140773 466 ntBASIC10.37□□□□□ -0.75
Sdc1P18828 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC10.37□□□□□ -0.75
Sdc1P18828 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
Sdc1P18828 AC126408.1-201ENSMUST00000225184 523 ntBASIC10.37□□□□□ -0.75
Sdc1P18828 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Sdc1P18828 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Sdc1P18828 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Sdc1P18828 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Sdc1P18828 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
Sdc1P18828 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms