Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
Cdx1P18111 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC10.3□□□□□ -0.76
Cdx1P18111 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC10.3□□□□□ -0.76
Cdx1P18111 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC10.3□□□□□ -0.76
Cdx1P18111 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC10.3□□□□□ -0.76
Cdx1P18111 Gm43984-201ENSMUST00000204572 2864 ntBASIC10.3□□□□□ -0.76
Cdx1P18111 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC10.3□□□□□ -0.76
Cdx1P18111 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC10.3□□□□□ -0.76
Cdx1P18111 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Gm6912-201ENSMUST00000117218 544 ntBASIC10.3□□□□□ -0.76
Cdx1P18111 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC10.3□□□□□ -0.76
Cdx1P18111 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC10.3□□□□□ -0.76
Cdx1P18111 Gm12091-201ENSMUST00000146791 830 ntBASIC10.3□□□□□ -0.76
Cdx1P18111 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC10.3□□□□□ -0.76
Cdx1P18111 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC10.3□□□□□ -0.76
Cdx1P18111 Gm21854-201ENSMUST00000179901 471 ntBASIC10.3□□□□□ -0.76
Cdx1P18111 Gm28760-201ENSMUST00000185995 736 ntBASIC10.3□□□□□ -0.76
Cdx1P18111 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC10.3□□□□□ -0.76
Cdx1P18111 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC10.3□□□□□ -0.76
Cdx1P18111 Gm19220-201ENSMUST00000222682 803 ntBASIC10.3□□□□□ -0.76
Cdx1P18111 AC123645.1-201ENSMUST00000228469 605 ntBASIC10.3□□□□□ -0.76
Cdx1P18111 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Gm9797-201ENSMUST00000052902 613 ntBASIC10.3□□□□□ -0.76
Cdx1P18111 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC10.3□□□□□ -0.76
Cdx1P18111 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 AC154639.1-201ENSMUST00000224393 2849 ntBASIC10.3□□□□□ -0.76
Cdx1P18111 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Gm43075-201ENSMUST00000198613 3905 ntBASIC10.3□□□□□ -0.76
Cdx1P18111 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC10.3□□□□□ -0.76
Cdx1P18111 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
Cdx1P18111 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC10.29□□□□□ -0.76
Cdx1P18111 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Gm43417-201ENSMUST00000201586 5207 ntBASIC10.29□□□□□ -0.76
Cdx1P18111 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
Cdx1P18111 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC10.29□□□□□ -0.76
Cdx1P18111 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC10.29□□□□□ -0.76
Cdx1P18111 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
Cdx1P18111 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC10.29□□□□□ -0.76
Cdx1P18111 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC10.29□□□□□ -0.76
Cdx1P18111 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC10.29□□□□□ -0.76
Cdx1P18111 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
Cdx1P18111 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
Cdx1P18111 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC10.29□□□□□ -0.76
Cdx1P18111 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
Cdx1P18111 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms