Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Rnf17-202ENSMUST00000223627 2077 ntBASIC12.12□□□□□ -0.47
Lire1P11260 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC12.12□□□□□ -0.47
Lire1P11260 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 AC159196.2-201ENSMUST00000224082 1622 ntBASIC12.12□□□□□ -0.47
Lire1P11260 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Gm29649-201ENSMUST00000185649 419 ntBASIC12.12□□□□□ -0.47
Lire1P11260 Gm37424-201ENSMUST00000191727 561 ntBASIC12.12□□□□□ -0.47
Lire1P11260 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Lire1P11260 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Lire1P11260 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Lire1P11260 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Lire1P11260 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC12.12□□□□□ -0.47
Lire1P11260 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
Lire1P11260 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC12.11□□□□□ -0.47
Lire1P11260 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Lire1P11260 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Sox5os1-201ENSMUST00000156994 1585 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Gm14660-201ENSMUST00000119809 575 ntBASIC12.11□□□□□ -0.47
Lire1P11260 Gm11557-201ENSMUST00000120200 1008 ntBASIC12.11□□□□□ -0.47
Lire1P11260 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC12.11□□□□□ -0.47
Lire1P11260 Gm17420-201ENSMUST00000164753 153 ntBASIC12.11□□□□□ -0.47
Lire1P11260 Gm8927-201ENSMUST00000181978 981 ntBASIC12.11□□□□□ -0.47
Lire1P11260 Ighv1-51-201ENSMUST00000192903 354 ntBASIC12.11□□□□□ -0.47
Lire1P11260 Gm43094-201ENSMUST00000196549 921 ntBASIC12.11□□□□□ -0.47
Lire1P11260 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Gm7561-201ENSMUST00000211203 886 ntBASIC12.11□□□□□ -0.47
Lire1P11260 Gm3222-201ENSMUST00000071282 990 ntBASIC12.11□□□□□ -0.47
Lire1P11260 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Lire1P11260 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Lire1P11260 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC12.11□□□□□ -0.47
Lire1P11260 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC12.11□□□□□ -0.47
Lire1P11260 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC12.11□□□□□ -0.47
Lire1P11260 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Lire1P11260 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 AC153506.1-201ENSMUST00000218768 2915 ntBASIC12.1□□□□□ -0.47
Lire1P11260 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC12.1□□□□□ -0.47
Lire1P11260 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Lire1P11260 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.1□□□□□ -0.47
Lire1P11260 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC12.1□□□□□ -0.47
Lire1P11260 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 103.8 ms