Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC10.49□□□□□ -0.73
Hmgb3O54879 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Tom1l2-204ENSMUST00000095254 4940 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Kalrn-202ENSMUST00000089655 6506 ntTSL 5 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm38037-201ENSMUST00000192600 1624 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm13886-201ENSMUST00000117876 1183 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm12537-201ENSMUST00000119266 1002 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm12070-201ENSMUST00000119551 1002 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm12671-201ENSMUST00000119978 1002 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm13292-201ENSMUST00000120014 1000 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm12403-201ENSMUST00000121384 959 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm14730-201ENSMUST00000122378 1045 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC10.49□□□□□ -0.73
Hmgb3O54879 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm10359-201ENSMUST00000180167 1002 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm12033-201ENSMUST00000180654 1002 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm5559-201ENSMUST00000180755 1002 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm4335-201ENSMUST00000182581 1004 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm7498-201ENSMUST00000203282 1084 ntBASIC10.49□□□□□ -0.73
Hmgb3O54879 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hmgb3O54879 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Peg10-203ENSMUST00000176551 6567 ntTSL 2 BASIC10.49□□□□□ -0.73
Hmgb3O54879 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Gm43660-201ENSMUST00000200956 6548 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Gm15653-201ENSMUST00000119247 907 ntBASIC10.48□□□□□ -0.73
Hmgb3O54879 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Gm43474-201ENSMUST00000196415 774 ntBASIC10.48□□□□□ -0.73
Hmgb3O54879 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC10.48□□□□□ -0.73
Hmgb3O54879 Gm18206-201ENSMUST00000207027 926 ntBASIC10.48□□□□□ -0.73
Hmgb3O54879 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
Hmgb3O54879 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hmgb3O54879 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC10.48□□□□□ -0.73
Hmgb3O54879 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 148.5 ms