Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cpsf3Q9QXK7 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cpsf3Q9QXK7 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.68□□□□□ -0.22
Cpsf3Q9QXK7 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cpsf3Q9QXK7 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cpsf3Q9QXK7 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
Cpsf3Q9QXK7 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cpsf3Q9QXK7 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Gm42840-201ENSMUST00000200303 2251 ntBASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Gm12241-201ENSMUST00000118330 726 ntBASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Gm15703-201ENSMUST00000120250 880 ntBASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Gm37489-201ENSMUST00000191883 159 ntBASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Cpsf3Q9QXK7 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Gm38094-201ENSMUST00000195864 2978 ntBASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Zkscan3-207ENSMUST00000223831 2101 ntBASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Gm13736-201ENSMUST00000119272 253 ntBASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Gm5863-201ENSMUST00000121760 1008 ntBASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Gm8018-201ENSMUST00000173536 789 ntBASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Gm44405-201ENSMUST00000198952 126 ntBASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Gm6334-201ENSMUST00000207083 228 ntBASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 AC132384.14-201ENSMUST00000219346 1147 ntBASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Gm43823-201ENSMUST00000197391 1808 ntBASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Ssr1-203ENSMUST00000225246 1825 ntBASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cpsf3Q9QXK7 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Gm14723-201ENSMUST00000118686 215 ntBASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Gm6621-201ENSMUST00000193251 772 ntBASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Gm38266-201ENSMUST00000194931 421 ntBASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Gm45925-201ENSMUST00000218882 744 ntBASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Cts7-204ENSMUST00000225321 1257 ntBASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Cpsf3Q9QXK7 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms