Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Gm11930-201ENSMUST00000117788 190 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Gm12058-201ENSMUST00000118614 437 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Gm16505-201ENSMUST00000179981 232 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Gm38317-201ENSMUST00000195564 343 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Gm13097-201ENSMUST00000210722 397 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Gm45925-201ENSMUST00000218882 744 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 AC166095.1-201ENSMUST00000223731 1241 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 AC113031.8-201ENSMUST00000227856 631 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Gm15459-201ENSMUST00000117405 1941 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Gm8355-201ENSMUST00000177767 1941 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Grk6-205ENSMUST00000224653 2976 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 AC123857.2-201ENSMUST00000225756 1582 ntBASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim54Q9ERP3 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Gm15547-201ENSMUST00000122152 333 ntBASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Gm15276-201ENSMUST00000145953 498 ntBASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Gm25043-201ENSMUST00000158604 212 ntBASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 AC155637.1-201ENSMUST00000218560 636 ntBASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 AC126253.1-202ENSMUST00000226732 835 ntBASIC13.78□□□□□ -0.2
Trim54Q9ERP3 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim54Q9ERP3 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
Trim54Q9ERP3 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Trim54Q9ERP3 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Trim54Q9ERP3 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Trim54Q9ERP3 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 97.9 ms