Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Gm22018-201ENSMUST00000104357 131 ntBASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Gm43822-201ENSMUST00000200285 476 ntBASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 AC138604.1-201ENSMUST00000226969 739 ntBASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Gm44401-201ENSMUST00000204462 2375 ntBASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdc40Q9DC48 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Gm8798-201ENSMUST00000211877 1661 ntBASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Gm14723-201ENSMUST00000118686 215 ntBASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Gm26185-201ENSMUST00000157692 266 ntBASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Gm25927-201ENSMUST00000175058 117 ntBASIC11.84□□□□□ -0.51
Cdc40Q9DC48 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Gm38297-201ENSMUST00000195122 1057 ntBASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Gm42627-201ENSMUST00000197347 224 ntBASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Gm17383-201ENSMUST00000078739 1041 ntBASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Kcnk16-202ENSMUST00000225596 2127 ntBASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Ntrk2-204ENSMUST00000224259 3049 ntBASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Gm14608-201ENSMUST00000120030 1553 ntBASIC11.84□□□□□ -0.51
Cdc40Q9DC48 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.51
Cdc40Q9DC48 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Cdc40Q9DC48 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms