Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Gm45598-202ENSMUST00000210719 986 ntBASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Gm19208-201ENSMUST00000213861 912 ntBASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Gm9333-201ENSMUST00000205452 1323 ntBASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Gm24231-201ENSMUST00000104315 133 ntBASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC17.38■□□□□ 0.37
Usp40Q8BWR4 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usp40Q8BWR4 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 AC238940.1-201ENSMUST00000225106 1858 ntBASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Gm5385-201ENSMUST00000118988 1559 ntBASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Abhd11os-203ENSMUST00000222613 363 ntBASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Retreg1-206ENSMUST00000228306 1430 ntBASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usp40Q8BWR4 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Gm12566-201ENSMUST00000121479 359 ntBASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC17.36■□□□□ 0.37
Usp40Q8BWR4 Gm19187-201ENSMUST00000206781 892 ntBASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms