Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Trim56Q80VI1 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Trim56Q80VI1 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC15□□□□□ -0.01
Trim56Q80VI1 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC15□□□□□ -0.01
Trim56Q80VI1 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Trim56Q80VI1 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Trim56Q80VI1 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC15□□□□□ -0.01
Trim56Q80VI1 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 AC167669.2-201ENSMUST00000224417 1620 ntBASIC14.99□□□□□ -0.01
Trim56Q80VI1 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Gm9004-201ENSMUST00000218739 1222 ntBASIC14.99□□□□□ -0.01
Trim56Q80VI1 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Gm44942-201ENSMUST00000096093 2072 ntBASIC14.99□□□□□ -0.01
Trim56Q80VI1 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim56Q80VI1 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Trim56Q80VI1 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Gm38266-201ENSMUST00000194931 421 ntBASIC14.98□□□□□ -0.01
Trim56Q80VI1 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 AC166095.1-201ENSMUST00000223731 1241 ntBASIC14.98□□□□□ -0.01
Trim56Q80VI1 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Trim56Q80VI1 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Gm12058-201ENSMUST00000118614 437 ntBASIC14.97□□□□□ -0.01
Trim56Q80VI1 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC14.97□□□□□ -0.01
Trim56Q80VI1 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
Trim56Q80VI1 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC14.97□□□□□ -0.01
Trim56Q80VI1 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC14.97□□□□□ -0.01
Trim56Q80VI1 Gm43822-201ENSMUST00000200285 476 ntBASIC14.97□□□□□ -0.01
Trim56Q80VI1 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Gm39404-201ENSMUST00000216350 313 ntBASIC14.97□□□□□ -0.01
Trim56Q80VI1 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim56Q80VI1 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 109.8 ms