Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Gm37105-201ENSMUST00000192251 2085 ntBASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Gm12151-201ENSMUST00000121374 290 ntBASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Gm42929-201ENSMUST00000198374 1286 ntBASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 AC156560.2-201ENSMUST00000221232 264 ntBASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Scaf4Q6PFF0 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Gm15544-201ENSMUST00000118776 1531 ntBASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 AC122860.2-201ENSMUST00000217967 2671 ntBASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Gm28693-202ENSMUST00000190758 331 ntBASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Gm42612-201ENSMUST00000197986 623 ntBASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Gm43170-201ENSMUST00000199827 612 ntBASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Gm4735-201ENSMUST00000138679 1302 ntBASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Gm5855-201ENSMUST00000200240 1305 ntBASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Scaf4Q6PFF0 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Gm43727-201ENSMUST00000198021 2647 ntBASIC12.52□□□□□ -0.4
Scaf4Q6PFF0 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Ldha-ps-201ENSMUST00000119390 995 ntBASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Gm13394-201ENSMUST00000121658 1000 ntBASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Gm14760-201ENSMUST00000121831 999 ntBASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Mir8102-201ENSMUST00000184148 139 ntBASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Scaf4Q6PFF0 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms