Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Gm19931-201ENSMUST00000198920 368 ntBASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Gm42550-201ENSMUST00000201553 960 ntBASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Gm44974-201ENSMUST00000206387 1279 ntBASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Gm40466-201ENSMUST00000212174 422 ntBASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Gm17330-201ENSMUST00000221047 165 ntBASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Gm24644-201ENSMUST00000157114 139 ntBASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Gm24196-201ENSMUST00000179161 110 ntBASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Gm27572-201ENSMUST00000183702 255 ntBASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Gm25007-201ENSMUST00000083808 133 ntBASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Gm43677-201ENSMUST00000198098 2378 ntBASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Gm8617-201ENSMUST00000118796 2222 ntBASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC12.92□□□□□ -0.34
Sh3rf1Q69ZI1 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Gm8565-201ENSMUST00000183259 1014 ntBASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sh3rf1Q69ZI1 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sh3rf1Q69ZI1 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms