Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Gm4875-201ENSMUST00000118257 786 ntBASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Gm25927-201ENSMUST00000175058 117 ntBASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Gm7063-201ENSMUST00000186840 981 ntBASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Gm19184-201ENSMUST00000196798 928 ntBASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Map1b-203ENSMUST00000223725 2669 ntBASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Gm9630-201ENSMUST00000178304 885 ntBASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Gm7775-201ENSMUST00000218871 853 ntBASIC11.93□□□□□ -0.5
Trim40Q3UWA4 AC165157.4-201ENSMUST00000220587 139 ntBASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trim40Q3UWA4 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 AC159621.2-201ENSMUST00000223519 1326 ntBASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Gm37660-201ENSMUST00000192754 1732 ntBASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim40Q3UWA4 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms