Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Gm37424-201ENSMUST00000191727 561 ntBASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Gm18584-201ENSMUST00000203098 964 ntBASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Zkscan3-207ENSMUST00000223831 2101 ntBASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC13.63□□□□□ -0.23
Upf3bQ3ULL6 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Gm8617-201ENSMUST00000118796 2222 ntBASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Gm23931-201ENSMUST00000103842 109 ntBASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Gm12957-201ENSMUST00000117835 377 ntBASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Gm37008-201ENSMUST00000195712 319 ntBASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Upf3bQ3ULL6 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Gm5187-201ENSMUST00000117317 991 ntBASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC13.61□□□□□ -0.23
Upf3bQ3ULL6 Gm7809-201ENSMUST00000153199 742 ntBASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 74.6 ms