Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Sox9Q04887 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Sox9Q04887 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC13.13□□□□□ -0.31
Sox9Q04887 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC13.13□□□□□ -0.31
Sox9Q04887 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 Gm9132-201ENSMUST00000210182 832 ntBASIC13.13□□□□□ -0.31
Sox9Q04887 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 Gm18974-201ENSMUST00000221478 1031 ntBASIC13.13□□□□□ -0.31
Sox9Q04887 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 Gm37133-201ENSMUST00000192705 1922 ntBASIC13.13□□□□□ -0.31
Sox9Q04887 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC13.13□□□□□ -0.31
Sox9Q04887 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC13.13□□□□□ -0.31
Sox9Q04887 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC13.13□□□□□ -0.31
Sox9Q04887 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC13.12□□□□□ -0.31
Sox9Q04887 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
Sox9Q04887 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Sox9Q04887 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Sox9Q04887 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC13.12□□□□□ -0.31
Sox9Q04887 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC13.12□□□□□ -0.31
Sox9Q04887 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Gm45398-201ENSMUST00000210561 165 ntBASIC13.12□□□□□ -0.31
Sox9Q04887 CT009713.8-201ENSMUST00000225448 560 ntBASIC13.12□□□□□ -0.31
Sox9Q04887 Ginm1-202ENSMUST00000065124 300 ntBASIC13.12□□□□□ -0.31
Sox9Q04887 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Sox9Q04887 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC13.12□□□□□ -0.31
Sox9Q04887 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Sox9Q04887 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC13.11□□□□□ -0.31
Sox9Q04887 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Sox9Q04887 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Sox9Q04887 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Gm14644-201ENSMUST00000116671 647 ntBASIC13.11□□□□□ -0.31
Sox9Q04887 Gm7851-201ENSMUST00000117574 323 ntBASIC13.11□□□□□ -0.31
Sox9Q04887 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC13.11□□□□□ -0.31
Sox9Q04887 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC13.11□□□□□ -0.31
Sox9Q04887 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC13.11□□□□□ -0.31
Sox9Q04887 Gm6652-201ENSMUST00000186414 1070 ntBASIC13.11□□□□□ -0.31
Sox9Q04887 Gm18038-201ENSMUST00000197900 485 ntBASIC13.11□□□□□ -0.31
Sox9Q04887 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC13.11□□□□□ -0.31
Sox9Q04887 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms