Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Col3a1P08121 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC15.02■□□□□ -0
Col3a1P08121 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Col3a1P08121 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col3a1P08121 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col3a1P08121 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Col3a1P08121 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC15.02■□□□□ -0
Col3a1P08121 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col3a1P08121 CT009718.3-201ENSMUST00000221116 367 ntBASIC15.02■□□□□ -0
Col3a1P08121 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col3a1P08121 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC15.02■□□□□ -0
Col3a1P08121 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC15.02■□□□□ -0
Col3a1P08121 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col3a1P08121 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC15.02■□□□□ -0
Col3a1P08121 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col3a1P08121 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col3a1P08121 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Col3a1P08121 AC116503.1-201ENSMUST00000215445 2192 ntBASIC15.02□□□□□ -0.01
Col3a1P08121 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col3a1P08121 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col3a1P08121 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col3a1P08121 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
Col3a1P08121 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col3a1P08121 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col3a1P08121 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col3a1P08121 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
Col3a1P08121 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC15.01□□□□□ -0.01
Col3a1P08121 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC15.01□□□□□ -0.01
Col3a1P08121 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Gm7848-201ENSMUST00000210739 718 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm14267-206ENSMUST00000226870 1209 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Gm4735-201ENSMUST00000138679 1302 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm5855-201ENSMUST00000200240 1305 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Gm28323-201ENSMUST00000186817 2499 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col3a1P08121 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC15.01□□□□□ -0.01
Col3a1P08121 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Col3a1P08121 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
Col3a1P08121 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col3a1P08121 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC15.01□□□□□ -0.01
Col3a1P08121 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC15.01□□□□□ -0.01
Col3a1P08121 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Gm29615-201ENSMUST00000185371 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm28224-201ENSMUST00000186078 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm29001-201ENSMUST00000186177 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm28292-201ENSMUST00000186593 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm28101-201ENSMUST00000187608 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm29076-201ENSMUST00000187689 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm28302-201ENSMUST00000187931 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm28646-201ENSMUST00000188220 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm28205-201ENSMUST00000189177 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm29032-201ENSMUST00000189797 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm28695-201ENSMUST00000190300 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm37448-201ENSMUST00000192795 697 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC15.01□□□□□ -0.01
Col3a1P08121 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC15.01□□□□□ -0.01
Col3a1P08121 Gm18556-201ENSMUST00000219748 1031 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col3a1P08121 AC154262.2-202ENSMUST00000225158 1331 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Gm42928-201ENSMUST00000197338 3339 ntBASIC15.01□□□□□ -0.01
Col3a1P08121 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Col3a1P08121 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col3a1P08121 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col3a1P08121 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Col3a1P08121 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC15□□□□□ -0.01
Col3a1P08121 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC15□□□□□ -0.01
Col3a1P08121 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Col3a1P08121 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col3a1P08121 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC15□□□□□ -0.01
Col3a1P08121 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 64.7 ms