Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim11Q99PQ2 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim11Q99PQ2 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Gm20633-201ENSMUST00000176742 2831 ntBASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Gm12490-201ENSMUST00000120255 560 ntBASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Gm17208-201ENSMUST00000168388 535 ntBASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim11Q99PQ2 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trim11Q99PQ2 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
Trim11Q99PQ2 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trim11Q99PQ2 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trim11Q99PQ2 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Trim11Q99PQ2 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trim11Q99PQ2 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Gm5896-201ENSMUST00000189662 1024 ntBASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Gm44772-201ENSMUST00000207623 1191 ntBASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Gm10146-201ENSMUST00000072739 309 ntBASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Gm44942-201ENSMUST00000096093 2072 ntBASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Gm43858-201ENSMUST00000199418 1778 ntBASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim11Q99PQ2 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Gm22331-201ENSMUST00000158066 136 ntBASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim11Q99PQ2 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms