Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Gm5638-201ENSMUST00000118618 1258 ntBASIC12.04□□□□□ -0.48
Clrn1Q8K445 Gm13813-201ENSMUST00000120998 787 ntBASIC12.04□□□□□ -0.48
Clrn1Q8K445 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Gm2639-201ENSMUST00000156881 1297 ntBASIC12.04□□□□□ -0.48
Clrn1Q8K445 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC12.04□□□□□ -0.48
Clrn1Q8K445 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Gm27682-201ENSMUST00000183930 110 ntBASIC12.04□□□□□ -0.48
Clrn1Q8K445 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC12.04□□□□□ -0.48
Clrn1Q8K445 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12.04□□□□□ -0.48
Clrn1Q8K445 AC154305.4-201ENSMUST00000224520 614 ntBASIC12.04□□□□□ -0.48
Clrn1Q8K445 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Gm3052-202ENSMUST00000188254 2224 ntBASIC12.04□□□□□ -0.48
Clrn1Q8K445 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Clrn1Q8K445 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Clrn1Q8K445 Gm9947-201ENSMUST00000067599 2920 ntBASIC12.04□□□□□ -0.48
Clrn1Q8K445 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Gm13829-201ENSMUST00000119600 138 ntBASIC12.03□□□□□ -0.48
Clrn1Q8K445 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC12.03□□□□□ -0.48
Clrn1Q8K445 Gm12363-201ENSMUST00000122250 668 ntBASIC12.03□□□□□ -0.48
Clrn1Q8K445 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Gm22121-201ENSMUST00000175148 54 ntBASIC12.03□□□□□ -0.48
Clrn1Q8K445 Gm43433-201ENSMUST00000196573 481 ntBASIC12.03□□□□□ -0.48
Clrn1Q8K445 Gm8099-201ENSMUST00000200510 742 ntBASIC12.03□□□□□ -0.48
Clrn1Q8K445 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Zkscan3-207ENSMUST00000223831 2101 ntBASIC12.03□□□□□ -0.48
Clrn1Q8K445 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.03□□□□□ -0.48
Clrn1Q8K445 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Clrn1Q8K445 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC12.02□□□□□ -0.48
Clrn1Q8K445 AC241621.2-201ENSMUST00000223991 2151 ntBASIC12.02□□□□□ -0.48
Clrn1Q8K445 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Clrn1Q8K445 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Clrn1Q8K445 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Clrn1Q8K445 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Clrn1Q8K445 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Clrn1Q8K445 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Clrn1Q8K445 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Clrn1Q8K445 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Clrn1Q8K445 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC12.02□□□□□ -0.49
Clrn1Q8K445 Gm26927-201ENSMUST00000182385 965 ntBASIC12.02□□□□□ -0.49
Clrn1Q8K445 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Clrn1Q8K445 Gm27731-201ENSMUST00000185192 107 ntBASIC12.02□□□□□ -0.49
Clrn1Q8K445 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Clrn1Q8K445 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms