Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Gm37844-201ENSMUST00000192473 4097 ntBASIC14.15□□□□□ -0.14
Trim47Q8C0E3 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim47Q8C0E3 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Trim47Q8C0E3 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 AC165260.3-202ENSMUST00000224550 1031 ntBASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Gm3052-202ENSMUST00000188254 2224 ntBASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim47Q8C0E3 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Gm43823-201ENSMUST00000197391 1808 ntBASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Gm45643-201ENSMUST00000211364 1484 ntBASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Gm10434-201ENSMUST00000101158 471 ntBASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Gm13875-201ENSMUST00000120162 282 ntBASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Gm7584-201ENSMUST00000175829 940 ntBASIC14.13□□□□□ -0.15
Trim47Q8C0E3 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Gm45878-201ENSMUST00000211839 241 ntBASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Zkscan3-207ENSMUST00000223831 2101 ntBASIC14.13□□□□□ -0.15
Trim47Q8C0E3 AC108416.1-202ENSMUST00000228927 1201 ntBASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim47Q8C0E3 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Trim47Q8C0E3 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms