Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 AC151895.1-201ENSMUST00000219025 1742 ntBASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 CU062626.3-201ENSMUST00000225522 1411 ntBASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Gm14644-201ENSMUST00000116671 647 ntBASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Gm3786-201ENSMUST00000202659 378 ntBASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp40Q8BWR4 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Gm23200-201ENSMUST00000104379 132 ntBASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Mir6979-201ENSMUST00000183927 56 ntBASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Gm28450-201ENSMUST00000187349 638 ntBASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Gm43138-201ENSMUST00000199123 708 ntBASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Ksr1-207ENSMUST00000226282 5260 ntBASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Usp40Q8BWR4 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Gm9022-201ENSMUST00000182482 992 ntBASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Gm32999-201ENSMUST00000192693 562 ntBASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Gm42863-201ENSMUST00000197875 2958 ntBASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Gm45433-201ENSMUST00000209386 247 ntBASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usp40Q8BWR4 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Usp40Q8BWR4 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Usp40Q8BWR4 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Usp40Q8BWR4 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC17.39■□□□□ 0.38
Usp40Q8BWR4 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Gm43858-201ENSMUST00000199418 1778 ntBASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Gm24749-201ENSMUST00000157838 343 ntBASIC17.39■□□□□ 0.37
Usp40Q8BWR4 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Usp40Q8BWR4 Gm37666-201ENSMUST00000194110 866 ntBASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms