Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Gm14921-201ENSMUST00000118643 908 ntBASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Gm2420-201ENSMUST00000119864 2149 ntBASIC14.27□□□□□ -0.13
Usp49Q6P9L4 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Usp49Q6P9L4 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Gm6222-202ENSMUST00000182143 629 ntBASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Mir6420-201ENSMUST00000185032 102 ntBASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Gm6652-201ENSMUST00000186414 1070 ntBASIC14.26□□□□□ -0.13
Usp49Q6P9L4 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Gm26035-201ENSMUST00000083065 308 ntBASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Gm6992-201ENSMUST00000217973 1607 ntBASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp49Q6P9L4 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Gm13394-201ENSMUST00000121658 1000 ntBASIC14.25□□□□□ -0.13
Usp49Q6P9L4 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Gm9299-201ENSMUST00000206392 1140 ntBASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 AC165260.3-202ENSMUST00000224550 1031 ntBASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Usp49Q6P9L4 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms