Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Gm18558-201ENSMUST00000186253 1214 ntBASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Gm37424-201ENSMUST00000191727 561 ntBASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Gm44397-201ENSMUST00000195950 113 ntBASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Gm42693-201ENSMUST00000196779 631 ntBASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Gm42442-201ENSMUST00000197951 1133 ntBASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 AC153937.1-201ENSMUST00000218734 412 ntBASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Gm44942-201ENSMUST00000096093 2072 ntBASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Gm6161-201ENSMUST00000121942 1102 ntBASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Gm6254-201ENSMUST00000168178 1072 ntBASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Gm6153-201ENSMUST00000172004 1058 ntBASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Gm29127-201ENSMUST00000188304 517 ntBASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Gm5641-202ENSMUST00000198699 1080 ntBASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 CT573086.1-201ENSMUST00000227202 1074 ntBASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Sh3rf1Q69ZI1 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Sh3rf1Q69ZI1 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms