Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 AC156031.2-201ENSMUST00000213107 3310 ntBASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Gm23935-201ENSMUST00000102303 57 ntBASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Gm24270-201ENSMUST00000102326 57 ntBASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Gm24245-201ENSMUST00000157318 57 ntBASIC11.96□□□□□ -0.49
Trim40Q3UWA4 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Gm37171-201ENSMUST00000192636 1185 ntBASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Gm17795-201ENSMUST00000214505 757 ntBASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Gm18983-201ENSMUST00000222884 2729 ntBASIC11.96□□□□□ -0.49
Trim40Q3UWA4 Arhgef3-204ENSMUST00000225949 3198 ntBASIC11.96□□□□□ -0.5
Trim40Q3UWA4 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Trim40Q3UWA4 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Trim40Q3UWA4 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Trim40Q3UWA4 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC11.96□□□□□ -0.5
Trim40Q3UWA4 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
Trim40Q3UWA4 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Trim40Q3UWA4 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Trim40Q3UWA4 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Trim40Q3UWA4 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
Trim40Q3UWA4 Ptprm-203ENSMUST00000224091 3773 ntBASIC11.96□□□□□ -0.5
Trim40Q3UWA4 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Trim40Q3UWA4 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Trim40Q3UWA4 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Gm2420-201ENSMUST00000119864 2149 ntBASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Gm27390-201ENSMUST00000184516 176 ntBASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim40Q3UWA4 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim40Q3UWA4 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms