Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC11.03□□□□□ -0.64
Nkx3-1P97436 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC11.03□□□□□ -0.64
Nkx3-1P97436 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 AC164107.1-201ENSMUST00000227730 2161 ntBASIC11.03□□□□□ -0.64
Nkx3-1P97436 AC154725.1-201ENSMUST00000224826 1961 ntBASIC11.03□□□□□ -0.64
Nkx3-1P97436 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Nkx3-1P97436 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC11.03□□□□□ -0.64
Nkx3-1P97436 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Nkx3-1P97436 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Nkx3-1P97436 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC11.02□□□□□ -0.64
Nkx3-1P97436 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Nkx3-1P97436 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Nkx3-1P97436 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Nkx3-1P97436 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Nkx3-1P97436 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Nkx3-1P97436 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Gm43289-201ENSMUST00000200537 1475 ntBASIC11.02□□□□□ -0.65
Nkx3-1P97436 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Gm14277-201ENSMUST00000121195 360 ntBASIC11.02□□□□□ -0.65
Nkx3-1P97436 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Gm13570-201ENSMUST00000140763 309 ntBASIC11.02□□□□□ -0.65
Nkx3-1P97436 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Gm27341-201ENSMUST00000183570 106 ntBASIC11.02□□□□□ -0.65
Nkx3-1P97436 Gm3096-201ENSMUST00000185770 364 ntBASIC11.02□□□□□ -0.65
Nkx3-1P97436 Gm44405-201ENSMUST00000198952 126 ntBASIC11.02□□□□□ -0.65
Nkx3-1P97436 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC11.02□□□□□ -0.65
Nkx3-1P97436 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Nkx3-1P97436 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Gm11439-201ENSMUST00000118598 409 ntBASIC11.01□□□□□ -0.65
Nkx3-1P97436 Gm14109-201ENSMUST00000118814 309 ntBASIC11.01□□□□□ -0.65
Nkx3-1P97436 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC11.01□□□□□ -0.65
Nkx3-1P97436 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC11.01□□□□□ -0.65
Nkx3-1P97436 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Gstp-ps-201ENSMUST00000195526 631 ntBASIC11.01□□□□□ -0.65
Nkx3-1P97436 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 AC166095.1-201ENSMUST00000223731 1241 ntBASIC11.01□□□□□ -0.65
Nkx3-1P97436 AC161537.1-201ENSMUST00000226199 1015 ntBASIC11.01□□□□□ -0.65
Nkx3-1P97436 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms