Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Gm45684-201ENSMUST00000210244 1571 ntBASIC15.21■□□□□ 0.03
Rfx1P48377 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Rfx1P48377 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Rfx1P48377 Gm42612-201ENSMUST00000197986 623 ntBASIC15.21■□□□□ 0.03
Rfx1P48377 Gm43170-201ENSMUST00000199827 612 ntBASIC15.21■□□□□ 0.03
Rfx1P48377 Gm45195-201ENSMUST00000205597 1008 ntBASIC15.21■□□□□ 0.03
Rfx1P48377 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
Rfx1P48377 Gm5780-201ENSMUST00000217774 1834 ntBASIC15.21■□□□□ 0.03
Rfx1P48377 Gm43075-201ENSMUST00000198613 3905 ntBASIC15.21■□□□□ 0.03
Rfx1P48377 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Rfx1P48377 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx1P48377 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rfx1P48377 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
Rfx1P48377 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rfx1P48377 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rfx1P48377 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Rfx1P48377 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rfx1P48377 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Rfx1P48377 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rfx1P48377 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Rfx1P48377 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Rfx1P48377 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Rfx1P48377 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC15.2■□□□□ 0.02
Rfx1P48377 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC15.2■□□□□ 0.02
Rfx1P48377 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Rfx1P48377 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC15.2■□□□□ 0.02
Rfx1P48377 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Rfx1P48377 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Rfx1P48377 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Gm22189-201ENSMUST00000103822 86 ntBASIC15.2■□□□□ 0.02
Rfx1P48377 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC15.2■□□□□ 0.02
Rfx1P48377 Gm13813-201ENSMUST00000120998 787 ntBASIC15.2■□□□□ 0.02
Rfx1P48377 Gm14719-201ENSMUST00000121891 340 ntBASIC15.2■□□□□ 0.02
Rfx1P48377 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC15.2■□□□□ 0.02
Rfx1P48377 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC15.2■□□□□ 0.02
Rfx1P48377 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 AC132863.2-201ENSMUST00000226643 799 ntBASIC15.2■□□□□ 0.02
Rfx1P48377 AC169036.1-201ENSMUST00000227994 296 ntBASIC15.2■□□□□ 0.02
Rfx1P48377 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Rfx1P48377 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx1P48377 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC15.2■□□□□ 0.02
Rfx1P48377 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Rfx1P48377 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Rfx1P48377 AC166574.4-201ENSMUST00000227165 1937 ntBASIC15.19■□□□□ 0.02
Rfx1P48377 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC15.19■□□□□ 0.02
Rfx1P48377 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC15.19■□□□□ 0.02
Rfx1P48377 Gm24694-201ENSMUST00000180054 110 ntBASIC15.19■□□□□ 0.02
Rfx1P48377 Gm27663-201ENSMUST00000184839 110 ntBASIC15.19■□□□□ 0.02
Rfx1P48377 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC15.19■□□□□ 0.02
Rfx1P48377 Gm6458-201ENSMUST00000211573 635 ntBASIC15.19■□□□□ 0.02
Rfx1P48377 AC122305.4-201ENSMUST00000216159 1206 ntBASIC15.19■□□□□ 0.02
Rfx1P48377 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Hist1h2al-201ENSMUST00000091708 339 ntBASIC15.19■□□□□ 0.02
Rfx1P48377 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Rfx1P48377 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Rfx1P48377 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Rfx1P48377 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Rfx1P48377 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC15.19■□□□□ 0.02
Rfx1P48377 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx1P48377 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms