Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC12.02□□□□□ -0.49
Trim39Q9ESN2 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim39Q9ESN2 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Gm13689-201ENSMUST00000119360 685 ntBASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 Atg10-201ENSMUST00000022119 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim39Q9ESN2 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12□□□□□ -0.49
Trim39Q9ESN2 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Trim39Q9ESN2 Gm43134-201ENSMUST00000199434 1886 ntBASIC12□□□□□ -0.49
Trim39Q9ESN2 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12□□□□□ -0.49
Trim39Q9ESN2 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Trim39Q9ESN2 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12□□□□□ -0.49
Trim39Q9ESN2 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC12□□□□□ -0.49
Trim39Q9ESN2 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC12□□□□□ -0.49
Trim39Q9ESN2 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC12□□□□□ -0.49
Trim39Q9ESN2 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Gm38223-201ENSMUST00000194484 695 ntBASIC12□□□□□ -0.49
Trim39Q9ESN2 Gtpbp10-211ENSMUST00000198799 648 ntBASIC12□□□□□ -0.49
Trim39Q9ESN2 2900076G11Rik-201ENSMUST00000202297 631 ntBASIC12□□□□□ -0.49
Trim39Q9ESN2 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Trim39Q9ESN2 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC12□□□□□ -0.49
Trim39Q9ESN2 AC238811.3-201ENSMUST00000225422 709 ntBASIC12□□□□□ -0.49
Trim39Q9ESN2 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC12□□□□□ -0.49
Trim39Q9ESN2 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC12□□□□□ -0.49
Trim39Q9ESN2 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim39Q9ESN2 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim39Q9ESN2 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms