Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim54Q9ERP3 Gm6992-201ENSMUST00000217973 1607 ntBASIC13.85□□□□□ -0.19
Trim54Q9ERP3 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim54Q9ERP3 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim54Q9ERP3 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim54Q9ERP3 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Trim54Q9ERP3 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC13.85□□□□□ -0.19
Trim54Q9ERP3 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim54Q9ERP3 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim54Q9ERP3 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
Trim54Q9ERP3 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim54Q9ERP3 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Gm37737-201ENSMUST00000195013 1638 ntBASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Gm2606-201ENSMUST00000100754 1002 ntBASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Gm44967-201ENSMUST00000207047 631 ntBASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Gm7293-201ENSMUST00000216682 1007 ntBASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 AC167013.1-201ENSMUST00000228592 202 ntBASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Gm10782-202ENSMUST00000223775 1480 ntBASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim54Q9ERP3 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Trim54Q9ERP3 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Trim54Q9ERP3 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Trim54Q9ERP3 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC13.83□□□□□ -0.19
Trim54Q9ERP3 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Trim54Q9ERP3 AC122314.1-201ENSMUST00000223056 2239 ntBASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Gm28386-201ENSMUST00000189147 1849 ntBASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Mir5132-201ENSMUST00000175166 71 ntBASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Trim54Q9ERP3 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 56.8 ms