Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Gm14255-201ENSMUST00000128846 248 ntTSL 5 BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Gm14232-201ENSMUST00000137176 446 ntTSL 3 BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Gm8574-201ENSMUST00000203207 924 ntBASIC16.93■□□□□ 0.3
Scn4aQ9ER60 AI463170-202ENSMUST00000218453 558 ntTSL 2 BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Abracl-203ENSMUST00000218994 425 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Mcpt4-201ENSMUST00000043249 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Olfr60-201ENSMUST00000075470 936 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Scn4aQ9ER60 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Defa-ps17-201ENSMUST00000121849 171 ntBASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 4930578M01Rik-201ENSMUST00000180490 907 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Gm43671-201ENSMUST00000200422 433 ntBASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Gm45094-201ENSMUST00000207013 617 ntBASIC16.92■□□□□ 0.3
Scn4aQ9ER60 AC142266.1-201ENSMUST00000228107 415 ntBASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Gm5780-201ENSMUST00000217774 1834 ntBASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Scn4aQ9ER60 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gm9673-201ENSMUST00000119287 781 ntBASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gm14993-201ENSMUST00000121180 164 ntBASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Tmem242-202ENSMUST00000185896 780 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gm45113-201ENSMUST00000207518 165 ntBASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gm8436-201ENSMUST00000210152 1080 ntBASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gm5749-201ENSMUST00000210673 1090 ntBASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Crygf-201ENSMUST00000027082 627 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 AU016765-201ENSMUST00000097295 946 ntTSL 2 BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gm15707-201ENSMUST00000118804 996 ntBASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gm16305-201ENSMUST00000140747 556 ntBASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Gm6358-202ENSMUST00000187643 489 ntAPPRIS P5 BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 AC170597.1-201ENSMUST00000221956 440 ntTSL 2 BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 AC158392.3-201ENSMUST00000224271 1284 ntBASIC16.91■□□□□ 0.3
Scn4aQ9ER60 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Olfr63-201ENSMUST00000067840 955 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC16.91■□□□□ 0.3
Scn4aQ9ER60 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 78.1 ms