Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Ddx56Q9D0R4 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Gm15897-201ENSMUST00000117770 1486 ntBASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Gm44775-201ENSMUST00000207266 1456 ntBASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Gm12390-201ENSMUST00000117897 397 ntBASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Gm16177-201ENSMUST00000120728 718 ntBASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Gm17150-201ENSMUST00000165577 381 ntBASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Gm8602-201ENSMUST00000184045 607 ntBASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Ddx56Q9D0R4 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Gm43818-201ENSMUST00000200605 466 ntBASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Gm32025-201ENSMUST00000217960 307 ntBASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Rnf17-202ENSMUST00000223627 2077 ntBASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Ddx56Q9D0R4 Gm42748-201ENSMUST00000199354 2341 ntBASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Gm6652-201ENSMUST00000186414 1070 ntBASIC13.42□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms