Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Ntrk2-204ENSMUST00000224259 3049 ntBASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm42840-201ENSMUST00000200303 2251 ntBASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm13813-201ENSMUST00000120998 787 ntBASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm12291-201ENSMUST00000121627 311 ntBASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm13123-201ENSMUST00000122173 492 ntBASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm26083-201ENSMUST00000157904 193 ntBASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm45684-201ENSMUST00000210244 1571 ntBASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Gm5620-201ENSMUST00000077991 1348 ntBASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ushbp1Q8R370 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 AC125108.1-201ENSMUST00000218986 2330 ntBASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Mir877-201ENSMUST00000104738 85 ntBASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Rn7s1-201ENSMUST00000174924 300 ntBASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Rn7s2-201ENSMUST00000175032 300 ntBASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Gm26461-201ENSMUST00000175064 290 ntBASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Gm5850-201ENSMUST00000192923 1206 ntBASIC14.32□□□□□ -0.12
Ushbp1Q8R370 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Olfr284-202ENSMUST00000206647 966 ntBASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Gm7619-201ENSMUST00000210649 1282 ntBASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Gm45865-201ENSMUST00000211815 945 ntBASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ushbp1Q8R370 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Mypopos-202ENSMUST00000205975 2321 ntBASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 75 ms