Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Syne4Q8CII8 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Syne4Q8CII8 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Syne4Q8CII8 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Syne4Q8CII8 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
Syne4Q8CII8 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Syne4Q8CII8 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Syne4Q8CII8 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Gm11667-201ENSMUST00000119828 486 ntBASIC14.39□□□□□ -0.11
Syne4Q8CII8 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC14.39□□□□□ -0.11
Syne4Q8CII8 Gm10051-201ENSMUST00000145209 414 ntBASIC14.39□□□□□ -0.11
Syne4Q8CII8 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Gm8494-201ENSMUST00000178171 1233 ntBASIC14.39□□□□□ -0.11
Syne4Q8CII8 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Syne4Q8CII8 AC140293.1-201ENSMUST00000225626 1247 ntBASIC14.39□□□□□ -0.11
Syne4Q8CII8 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 AC159308.2-201ENSMUST00000213592 2325 ntBASIC14.39□□□□□ -0.11
Syne4Q8CII8 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Syne4Q8CII8 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Gm14058-201ENSMUST00000116082 735 ntBASIC14.38□□□□□ -0.11
Syne4Q8CII8 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 AC135469.1-201ENSMUST00000225984 772 ntBASIC14.38□□□□□ -0.11
Syne4Q8CII8 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Gm18626-201ENSMUST00000221512 1409 ntBASIC14.38□□□□□ -0.11
Syne4Q8CII8 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Syne4Q8CII8 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 Gm42937-201ENSMUST00000197360 752 ntBASIC14.37□□□□□ -0.11
Syne4Q8CII8 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC14.37□□□□□ -0.11
Syne4Q8CII8 AC163667.3-201ENSMUST00000225774 222 ntBASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms