Protein–RNA interactions for Protein: Q8BTS4

Nup54, Nuclear pore complex protein Nup54, mousemouse

Known RBP Predictions only

Length 510 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup54Q8BTS4 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Nup54Q8BTS4 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC13.08□□□□□ -0.32
Nup54Q8BTS4 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC13.08□□□□□ -0.32
Nup54Q8BTS4 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.08□□□□□ -0.32
Nup54Q8BTS4 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Nup54Q8BTS4 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Gm18222-201ENSMUST00000202416 1387 ntBASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Gm10434-201ENSMUST00000101158 471 ntBASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Gm27516-201ENSMUST00000184237 98 ntBASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Gm8227-201ENSMUST00000223306 571 ntBASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nup54Q8BTS4 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Gm15198-201ENSMUST00000117283 177 ntBASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Gm13297-201ENSMUST00000120205 934 ntBASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Gm11964-201ENSMUST00000120982 444 ntBASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Mir8109-201ENSMUST00000184375 117 ntBASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC13.06□□□□□ -0.32
Nup54Q8BTS4 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 AC155298.2-201ENSMUST00000225485 6226 ntBASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Gm15370-201ENSMUST00000117158 253 ntBASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Gm15703-201ENSMUST00000120250 880 ntBASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Gm5863-201ENSMUST00000121760 1008 ntBASIC13.05□□□□□ -0.32
Nup54Q8BTS4 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC13.05□□□□□ -0.32
Nup54Q8BTS4 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 64.5 ms