Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Gm27501-201ENSMUST00000183599 107 ntBASIC15.04■□□□□ -0
Limch1Q3UH68 Ighv8-10-201ENSMUST00000199579 358 ntBASIC15.04■□□□□ -0
Limch1Q3UH68 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC15.04■□□□□ -0
Limch1Q3UH68 Gm3961-201ENSMUST00000204425 994 ntBASIC15.04■□□□□ -0
Limch1Q3UH68 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC15.04■□□□□ -0
Limch1Q3UH68 Gm2824-203ENSMUST00000226189 1228 ntBASIC15.04■□□□□ -0
Limch1Q3UH68 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
Limch1Q3UH68 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Limch1Q3UH68 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Limch1Q3UH68 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Gm42840-201ENSMUST00000200303 2251 ntBASIC15.04■□□□□ -0
Limch1Q3UH68 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Rnf17-202ENSMUST00000223627 2077 ntBASIC15.04■□□□□ -0
Limch1Q3UH68 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC15.03■□□□□ -0
Limch1Q3UH68 Gm12539-201ENSMUST00000121549 1098 ntBASIC15.03■□□□□ -0
Limch1Q3UH68 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC15.03■□□□□ -0
Limch1Q3UH68 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Gm26927-201ENSMUST00000182385 965 ntBASIC15.03■□□□□ -0
Limch1Q3UH68 Gm38266-201ENSMUST00000194931 421 ntBASIC15.03■□□□□ -0
Limch1Q3UH68 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Gm43118-201ENSMUST00000199149 775 ntBASIC15.03■□□□□ -0
Limch1Q3UH68 Gm43822-201ENSMUST00000200285 476 ntBASIC15.03■□□□□ -0
Limch1Q3UH68 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Gm45930-201ENSMUST00000221330 292 ntBASIC15.03■□□□□ -0
Limch1Q3UH68 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Snora73a-201ENSMUST00000082453 205 ntBASIC15.03■□□□□ -0
Limch1Q3UH68 Gm10268-201ENSMUST00000085340 555 ntBASIC15.03■□□□□ -0
Limch1Q3UH68 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC15.03■□□□□ -0
Limch1Q3UH68 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC15.03■□□□□ -0
Limch1Q3UH68 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC15.03■□□□□ -0
Limch1Q3UH68 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Limch1Q3UH68 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Limch1Q3UH68 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Limch1Q3UH68 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC15.02■□□□□ -0
Limch1Q3UH68 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC15.02■□□□□ -0
Limch1Q3UH68 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC15.02■□□□□ -0
Limch1Q3UH68 Gm13369-201ENSMUST00000119442 987 ntBASIC15.02■□□□□ -0
Limch1Q3UH68 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC15.02■□□□□ -0
Limch1Q3UH68 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC15.02■□□□□ -0
Limch1Q3UH68 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC15.02■□□□□ -0
Limch1Q3UH68 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Gm27516-201ENSMUST00000184237 98 ntBASIC15.02■□□□□ -0
Limch1Q3UH68 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC15.02■□□□□ -0
Limch1Q3UH68 Gm37922-201ENSMUST00000195596 455 ntBASIC15.02■□□□□ -0
Limch1Q3UH68 Gm37497-201ENSMUST00000195830 798 ntBASIC15.02■□□□□ -0
Limch1Q3UH68 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC15.02■□□□□ -0
Limch1Q3UH68 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Limch1Q3UH68 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 81.5 ms